Journals & Proceedings
Abu-Khzam FN, Langston MA, Shanbhag P and Symons CT. Scalable parallel algorithms for FPT problems, Algorithmica,
2006, vol. 45, 269-284.
Bao L, Peirce JL, Zhou M, Li H, Goldowitz D, Williams RW, Lu L and Cui Y.
An integrative
genomics strategy for systematic characterization of genetic loci modulating phenotypes,
Human Molecular
Genetics, 2007 Jun 1;16(11):1381-90.
Bao L, Wei L, Peirce JL, Homayouni R, Li H, Zhou M, Chen H, Lu L, Williams RW, Pfeffer
LM, Goldowitz D and Cui Y. Combining gene expression QTL mapping and phenotypic spectrum analysis
to uncover gene regulatory relations, Mammalian Genome, 17:575-583.
Bao L, Zhou M, Wu L, Lu L, Goldowitz D, Williams RW and Cui Y. PolymiRTS Database: linking polymorphisms in microRNA target sites
with complex traits, Nucleic Acids Research, 35: D51-D54.
Heinrich KE. Automated Gene Classification using Nonnegative Matrix Factorization
on Biomedical Literature, Ph.D. Dissertation, 2007, University of Tennessee.
Heinrich KE, Berry MW and Homayouni R. Gene Tree Labeling Using Nonnegative Matrix Factorization on Biomedical
Literature,
Computational Intelligence and Neuroscience, Volume 2008, Article ID
276535
Homayouni R, Heinrich KE, Wei L and Berry MW. Gene clustering by Latent Semantic Indexing of MEDLINE abstracts,
Bioinformatics, 2005 21(1):104-115.
Kirova R, Langston MA, Peng X, Perkins AD, and Chesler EJ,
A systems genetic analysis of chronic fatigue syndrome: combinatorial data integration
from SNPs to differential diagnosis of disease,
Proceedings, International Conference for the Critical Assessment of Microarray
Data Analysis (CAMDA), Durham, North Carolina, 2006.
Langston MA, Perkins AD, Saxton AM, Scharff JA, and Voy BH.
Innovative computational methods for transcriptomic data analysis, The Computer Journal, 2008,
51(1):26-38.
Li H, Chen H, Bao L, Manly KF, Chesler EJ, Lu L, Wang J, Zhou M, Williams RW and
Cui Y. Integrative
Genetic Analysis of Transcription Modules: Towards Filling the Gap between Genetic
Loci and Inherited Traits, Human Molecular Genetics, 15:481-492.
Tjioe E, Berry M, and Homayouni R. Using a Literature-based NMF Model for
Discovering Gene Functional Relationships,
Proceedings of the First Workshop on Data Mining in Functional Genomics, IEEE International
Conference on Bioinformatics and Biomedicine, Philadelphia, PA, Nov. 3-5,
2008, pp. 185-192.
Voy BH, Scharff JA, Perkins AD, Saxton AM, Borate B, Chesler EJ, Branstetter LK
and Langston MA. Extracting gene networks for low dose radiation using graph theoretical
algorithms, PLoS Computational Biology, vol. 2 (7), 2006, e89.
Zhang B, VerBerkmoes NC, Langston MA, Uberbacher E, Hettich RL and Samatova NF.
Detecting differential
and correlated protein expression in label-free shotgun proteomics, Journal of Proteome Research,
vol. 5, 2006, 2909-2918.